I now connected things in following order: PC-FW800 1TB HDD-FW800 2TB HDD-FW400 audio interface.
I have read somewhere long time ago that audio interface should be connected first in your FireWire chain so I obeyed this but it is always good to try a different configuration yourself to see if things improves without gaining any problems.
In this new configuration, disk usage reads 32% and for some reason the CPU usage has been dropped to 44%.
It is slightly slower than when those HDD were connected directly to PC's FW socket (26%) but it's definitely better than 53% when those HDD were chained after my FW400 audio interface.
Thanks for looking!
YS Sound Production

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